Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099908/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  174,073,964
 Normal Paired: 154,130,283 (88.54%)
 Chimeric Paired: 17,456,969 (10.03%)
 Chimeric Ambiguous: 2,087,406 (1.20%)
 Unmapped: 399,306 (0.23%)
 Ligation Motif Present: 27,501 (0.02%)
Alignable (Normal+Chimeric Paired): 171,587,252 (98.57%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-30T06:01:44,067]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 54,491,838 (31.30%)
PCR Duplicates: 117,095,414 (67.27%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 57,375,337
Intra-fragment Reads: 29,798,813 (17.12% / 54.68%)
Below MAPQ Threshold: 3,319,062 (1.91% / 6.09%)
Hi-C Contacts: 21,373,963 (12.28% / 39.22%)
 Ligation Motif Present: 11,103  (0.01% / 0.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 27% - 25% - 25% - 23%
Inter-chromosomal: 3,227,868  (1.85% / 5.92%)
Intra-chromosomal: 18,146,095  (10.42% / 33.30%)
Short Range (<20Kb): 11,487,514  (6.60% / 21.08%)
Long Range (>20Kb): 6,658,566  (3.83% / 12.22%)